Thursday, January 26, 2023

The Science of Designer Babies: A Genetic Counselor’s Perspective

An Interview with Liya Rabkina M.S. of Igenomix USA

by Disha Divakar, San Marin High School


Image of Liya Rabkina
Liya Rabkina
Having a baby is a serious responsibility and can be a difficult process. When a family is faced with a high chance of passing on an inherited, genetic condition, it can be very difficult and force them to consider their options. Preimplantation genetic testing (PGT for short) allows families to choose embryos with lower risks for these inherited conditions by checking for aneuploidies (abnormal chromosomes) during pregnancy. 

With these "Designer Babies" comes the question of what the future holds for embryo genetic testing, as well as the ethical considerations of this process. Liya Rabkina is a licensed and board-certified genetic counselor at Igenomix in San Francisco with an M.S. in genetic counseling. She presented The Science of Designer Babies: A Genetic Counselor’s Perspective at the Marin Science Seminar on January 25,2023, teaching us about her perspective on genetic testing on embryos. In this interview, she dives into what PGT testing looks like, when it should be used, ethical concerns with PGT-P testing, and future considerations.

What does the PGT testing process look like for your clients? (length, cost, worth, results)

I encourage you to look through our website: https://www.igenomix.com/genetic-solutions/pgt-m/. The timeline can vary from patient to patient but typically takes multiple months. The cost also varies depending on the specific testing ordered for the patient/couple and insurance coverage; it is in the thousands just to test embryos (not to mention the cost of IVF itself).


Which abnormal chromosomes (aneuploidies) are more manageable?


That depends on who you ask and how you define "manageable"! Most aneuploidies do not result in live birth (embryos with these may not implant or may miscarry). There are only a handful of aneuploidies that can result in live birth when present in all or most cells. These are trisomy 21 (Down syndrome), trisomy 13 (Patau syndrome), trisomy 18 (Edwards syndrome), and sex chromosome aneuploidies (extra or missing sex chromosomes). The spectrum of symptoms associated with Down syndrome is vast; some adults can live independently while others will need lifelong support. Babies with trisomy 13 and 18 typically don't survive past infancy. Sex chromosome aneuploidies can also vary in terms of clinical symptoms, but are considered milder (when compared to other aneuploidy syndromes). 


When giving your client options, can you explain ethical concerns and your input, or is it all up to the client’s wishes?


My team screens all referrals and discusses ethical concerns with the ordering clinician. We may even reject a case if our ethics committee believes we should not move forward with testing. That being said, I also use my clinical judgment when I speak with patients, even for cases that pass our ethics evaluation and are approved by the ordering clinician. I provide patients with information that can help them make the decision that is best for their families.


What is something you wish people understood better/knew about the moral concerns of this type of genetic testing?


I wish more people understood how challenging this process is for families and had a realistic understanding of the likelihood of success. After testing is complete, there are often far fewer embryos than couples are hoping to have available for transfer. I also wish more families had the resources available to them to understand the breadth of options available to them for family planning. Luckily, there are many checkpoints families go through before they receive a referral for us. So, most requests that the average person would consider to be unethical don't make it to the point of initiating this process.


Where do you draw the line regarding “Designer Babies” and PGT testing? Is there some situations you think are more moral than other?


Life-limiting conditions I strongly feel families should have the option to test for and select against. From speaking with families I know how difficult this can be for the parents and the child. I, personally, struggle when families use information that does not impact the health of their future baby for decision-making. For example, there is a new emerging technology we briefly reviewed during the talk called "PGT-P" which tests for "polygenic" (multi-gene) common conditions/risks. There are lots of societies and professional groups that work to guide the testing of embryos and ensure laboratories are ethical. 


What are some alternative approaches for your clients and how can they avoid the ethical concerns of PGT testing? Are there other ways for them to find out about the health of their embryos?


Unfortunately, there is no other way to test embryos (and if there were, the same ethical concerns would apply). If families forgo PGT, they can have diagnostic testing for their pregnancy or at birth. If testing is done during pregnancy, the options are to continue the pregnancy or terminate it. There are, of course, other moral/ethical considerations with terminating a pregnancy. With the current political climate, clinical termination is not always available (or may require a flight and stay in a different state - or could even have legal implications). The families that seek PGT typically want to avoid having to make the decision of whether or not to terminate a wanted pregnancy.


What is your take on the future of this kind of genetic testing and how it may advance?


PGT-P is a hot topic in my industry right now. There are also scientists working on finding ways to "fix" disease-causing genetic variations at the molecular level (rather than test for the condition and select against it). However, this seems to be pretty far off in the future. Ideally, there would be highly effective treatments available for all genetic conditions!


Thursday, December 1, 2022

"COVID 19 and Long Covid: Rapidly Developing Therapies For a New Disease" - An Interview With Art Wallace M.D. Ph.D. of the VA Medical Center San Francisco and UCSF

by Samantha Dvorin, Archie Williams High School 

Art Wallace is a cardiac anesthesiologist and biomedical engineer who works as a professor emeritus of anesthesiology and perioperative care at UCSF and the Chief of Anesthesia at VAMC SF. He researches drug and device development to reduce perioperative risk. He has a B.S. in engineering and applied science from Yale. He also has an M.D. and Ph.D. from Johns Hopkins Medical School in Biomedical Engineering. On Wednesday, November 30, 2022, Dr. Wallace presented "COVID 19 and Long Covid: Rapidly Developing Therapies For a New Disease" at the Marin Science Seminar. We asked him some questions about his work.

1. How has the world of drug development and research changed since the emergence of COVID-19?

Science has had to speed up dramatically. Normal drug development takes one to two decades. In COVID we had to do it in 1-2 years. Prior to COVID, the fastest any vaccine had ever been developed was 4 years. With COVID, it was done in 1 year! AIDS has been around 40 years and we still don't have a vaccine.

2.  Who is most at risk for Long COVID and is it preventable?

Older people, people with co-existing disease, and unvaccinated people. But, young, healthy, vaccinated people, who didn't get very ill with covid can still get Long COVID. Prevention is very simple, don't get COVID and get vaccinated and boosted.

3. What are some common misconceptions people have about COVID, especially Long COVID?

There are several diseases such as myofascial syndrome and chronic fatigue syndrome which we don't understand. We don't know the cause or have any treatment or know if they are really diseases. When a disease is of unclear origin with no therapy there is a tendency to say it is psychosomatic (in your head) or is just depression. When Long COVID came along some people thought it was just depression. Some thought it was psychosomatic. The NIH invested more than 1 billion dollars with the sole question of “is this a real disease?” and gave the grantees four years to figure it out. These grants were not allowed to search for cures for long covid, just ask, does it exist. A month after the request for proposals, an epidemiologist in the VA Al-Aly did epidemiology to show exactly what the symptoms were, how many people got them, and how long they last, essentially making the NIH studies, which hadn't yet even started, useless. 

4. Why does every patient experience Long COVID differently and does it have anything to do with previous health issues or the severity of their initial COVID diagnosis?

Long COVID seems to be a multitude of problems. Microvascular damage, autonomic damage, neuroinflammatory processes, cardiac and renal damage, and psychiatric problems. People who get severe COVID have more problems with long covid, but people who get mild COVID can still develop long covid. The exact cause is unclear. It is likely multiple factors including immune response, the severity of illness, microvascular damage with small thrombi causing stroke, neuroinflammation, and maybe some residual virus. The causes are unknown.

5. Does having the COVID vaccine and the subsequent boosters have any effect on the likelihood of getting Long COVID or on the severity of the disease? 

Yes. Vaccination reduces the risk of long covid by about 15%.

6.  What does a typical day as a cardiac anesthesiologist and biomedical engineer look like?

Get up at 5 am to go to work. Three days a week I work in the OR providing anesthesia care to patients. Two days a week I do administrative work (hire people, get them paid, etc, etc, etc). I then use the rest of the time to do science (figure out how to pay for it, fill out paperwork to get it approved, write grants, develop software, publish papers). Then go home around 7 pm. Oh, then I am on call at night and on weekends when people have a disaster.

Dr. Wallace in the operating room

7.  What advice would you give a young person interested in medicine or medical research? 

Study hard, take science, math, etc classes. Do well in class. Apply to the best college you can get into. Get perfect grades. Then take a year of English, a year of calculus or higher math, a year of chemistry with a lab, a year of organic chemistry with a lab, a year of physics with a lab, biochemistry, psychology, statistics, and then major in something. I was an electrical engineer. Volunteer in hospitals so you can decide if and why you want to be a doctor. Volunteer in a lab doing research to learn how to do research. Then apply to medical school and or an MD/Ph.D.

8. What is your team working on now to advance the drug development process for Covid and Long COVID? 

We are looking at publishing continuously a daily update on vaccine efficacy and boosters. We are trying to get funding for the long covid drug development project. Paying for research is the hardest part.


Learn More:



Wednesday, November 30, 2022

Covid-19 and Long COVID: Rapidly Developing Therapies for a New Disease

 On November 30, 2022 Art Wallace presented studies and statistics on a new disease, Long  COVID.

Art Wallace, MD PHD
Art Wallace, MD PHD


Art Wallace introducing himself!
Art Wallace introducing himself!

He explained the problems with Covid variants and why Long COVID presents negative long term effects.
Explaining their research objectives!
Explaining their research objectives!


Learn more about Covid-19 and Long COVID at Marin Science Seminar!

Covid-19 and Long Covid Seminar Teaser

 COVID-19 AND LONG COVID: RAPIDLY DEVELOPING THERAPIES FOR A NEW DISEASE

By Art Wallace, MD, PhD

November 30th, 2022 




Thursday, November 17, 2022

“Blinded by the Lack of Light: Genetics of Pigmentation and Eye Loss in Cave-dwelling Crustacean” - An Interview With Meredith Protas Ph.D. of Dominican University of California

 by Samantha Dvorin, Archie Williams High School 

Meredith Protas is an associate professor and MS Biological Sciences Director at Dominican University. Her lab investigates the evolution and genetics of cave-dwelling creatures like crustaceans. Previously, she did research at UC Berkeley on cave-dwelling crustaceans and studied the genetic basis of human eye disease at UCSF. She has a B.A. in biology from Pomona College and a Ph.D. in Genetics from Harvard. On Wednesday, November 16, 2022, Dr. Protas presented The Genetics Behind Eye Degeneration in Cave-dwelling Crustaceans at the Marin Science Seminar. We asked her some questions about what she does.

1. What made you interested in studying cave crustaceans and evolutionary biology in general?

I felt like there were a lot of interesting questions in cave biology and I wanted to understand how the same things (like eye loss and loss of pigment) happened in very different organisms.

 2. How are the cave-dwelling and surface-dwelling forms of the isopod crustacean different?

There are lots of things, but some examples include loss of eyes, loss of pigment, and longer antennae.

3. What is your favorite crustacean or cave-dwelling creature in general?

I like Proteus anguinus, which is a cave-dwelling salamander. It’s known for having an unusually long lifespan.

Proteus anguinus, also known as Olm

4. Since many animals lose traits they no longer need (like how many cave animals lose their eyes and pigment), are there any traits you think humans will lose as we continue to evolve?

That’s a good question- it’ll depend if losing something doesn’t cause some extra negative things from happening but also if there is an advantage to that loss. Also, it’ll depend if the loss gives humans a reproductive advantage.

5. What is hands-on field work like (ie. exploring caves and collecting samples)?

We don’t do much of this currently, but I have gone to caves to collect animals. Then we bring them to the lab and work with them there.

 6. What does a day in the lab with your Dominican University students look like?

We tend to do a lot of molecular work- PCR, DNA extraction, and gel electrophoresis.

Dr. Protas in the lab with a student

7. What advice would you give to young people interested in genetics and scientific research?

Find some interesting questions and see how you can be a part of answering them.

8. Are there any projects you are working on right now?

Yes, using some genomic techniques and also looking at variation present in the surface form.

Dr. Protas' Zoom Seminar

Learn More:

- https://works.bepress.com/meredith-protas/

- https://marinscienceseminar.com/blinded-by-the-lack-of-light/

Wednesday, November 16, 2022

The Genetics Behind Eye Degeneration in Cave-dwelling Crustaceans

 On November 16, 2022. Dr. Meredith Protas gave a presentation on zoom to share how genes and mutations are responsible for cave-specific characteristics in organisms!

Introduction to presentation.
Introduction to presentation.


Dr. Protas gave everyone opportunities to showcase their knowledge asking them driving questions!

Question- "How do unique characters evolve?"
Question- "How do unique characters evolve?"


We all learned a lot about cave animals and the traits that make them unique!

Cave Animals and their characteristics!
Cave Animals and their characteristics!

Dr. Protas explained how cave animals have no eyesight and are different colors compared to their terrestrial cousins.

What makes cave animals different?
What makes cave animals different?

Learn more about Cave-dwelling Crustaceans at Marin Science Seminar!

Wednesday, November 9, 2022

I'm a Botanist (and unfortunately I don't know why your succulent isn't flowering!)

 On November 9, 2022, Dr. Sarah Jacobs came to Terra Linda to share the field work and responsibilities of a Botanist.

Texas Indian Paintbrush
Texas Indian Paintbrush

Dr. Jacobs starts the presentation with a story of how she became a botanist.

Steps to becoming a botanist
Steps to becoming a botanist

Dr. Jacobs explains the role of a systematic botanist and museum scientist and how they collect data from the field to classify plants.

Systematic botany
Systematic botany

To learn more about Botany and the best parts of it visit Marin Science Seminar!

Interview with Irfan Kathiriya: How to Make or Break Your Heart

By: Sahiti Namburu School: Terra Linda High School Dr. Kathiriya is a pediatric cardiac anesthesiologist and Professor of Anesthesia at t...

About Us

Marin Science Seminar is a one-hour science lecture/presentation with a question and answer period open to all interested local teenagers, educators and community. Seminar sessions are held 12 Wednesday evenings during the school year, from 7:30 to 8:30 pm in the Innovation Hub at Terra Linda High School, 320 Nova Albion Way, San Rafael. Seminar speakers are scientists, mathematicians, engineers, physicians, technologists and computer programmers. The topics presented are in a specific area of the speaker’s expertise, geared to interested high school students.